In the SC-88 Pro user patches (native map and SC-88 map, variations 064 and 065) you can disable all Control Change messages or only the HOLD PEDAL message.
Although the chances are small that you are using only the user patches and receiving these messages is disabled in all user patches...
You might try resetting the SC-88 Pro's user memory:
"With the power turned on, press the INSTRUMENT< and INSTRUMENT> buttons simultaneously while holding down the SELECT button. The following display will appear: 'Init All, Sure?' If the ALL button is pressed, the factory setup will be executed." (Roland SC-88 Pro Service Notes,
https://www.synthxl.com/wp-content/uploads/2020/03/Roland-SC-88-Pro-Service-Manual.pdf)
Is the SC-88 Pro memory backup battery OK? No "Battery Low" message?